Journal articles 2007
Documents
Genetic and genomic approaches to develop rice germplasm for problem soils
Ismail AM, Heuer S, Thomson MJ and Wissuwa M (2007). Genetic and genomic approaches to develop rice germplasm for problem soils. Plant Molecular Biology 65(4):547–570. (DOI: 10.1007/s11103-007-9215-2). Not open access: view abstract
Ismail AM, Heuer S, Thomson MJ and Wissuwa M (2007). Genetic and genomic approaches to develop rice germplasm for problem soils. Plant Molecular Biology 65(4):547–570. (DOI: 10.1007/s11103-007-9215-2). Not open access: view abstract
Quantitative trait loci for yield and correlated traits under high and low soil nitrogen conditions in tropical maize
Ribaut J-M, Fracheboud Y, Monneveux P, Bänziger M, Vargas M and Jiang C (2007). Quantitative trait loci for yield and correlated traits under high and low soil nitrogen conditions in tropical maize. Molecular Breeding 20(1):15–29. (DOI 10.1007/s11032-006-9041-2). View online
Ribaut J-M, Fracheboud Y, Monneveux P, Bänziger M, Vargas M and Jiang C (2007). Quantitative trait loci for yield and correlated traits under high and low soil nitrogen conditions in tropical maize. Molecular Breeding 20(1):15–29. (DOI 10.1007/s11032-006-9041-2). View online
Detection of deletion mutants in rice via overgo hybridization onto membrane spotted arrays
Diaz G, Ryba M, Nelson R, Leung H and Leach J (2007). Detection of deletion mutants in rice via overgo hybridization onto membrane spotted arrays. Plant Molecular Biology Reporter 25(1–2):17–26. (DOI: 10.1007/s11105-007-0002-7). Not open access: view abstract
Diaz G, Ryba M, Nelson R, Leung H and Leach J (2007). Detection of deletion mutants in rice via overgo hybridization onto membrane spotted arrays. Plant Molecular Biology Reporter 25(1–2):17–26. (DOI: 10.1007/s11105-007-0002-7). Not open access: view abstract
Rapid method for detecting SNPs on agarose gels and applications for candidate gene mapping
Raghavan C, Naredo E, Wang H, Atienza G, Liu B, McNally KL and Leung H (2007). Rapid method for detecting SNPs on agarose gels and applications for candidate gene mapping. Molecular Breeding 19(2):87–101. (DOI: 10.1007/s11032-006-9046-x). Not open access: view abstract
Raghavan C, Naredo E, Wang H, Atienza G, Liu B, McNally KL and Leung H (2007). Rapid method for detecting SNPs on agarose gels and applications for candidate gene mapping. Molecular Breeding 19(2):87–101. (DOI: 10.1007/s11032-006-9046-x). Not open access: view abstract
In silico development of simple sequence repeat markers within the aeschynomenoid/dalbergoid and genistoid clades of the Leguminosae family and their transferability to Arachis hypogaea, groundnut
Mace ES, Varshney RK, Mahalakshmi V, Seetha K, Gafoor A, Leeladevi Y and Crouch JH (2007). In silico development of simple sequence repeat markers within the aeschynomenoid/dalbergoid and genistoid clades of the Leguminosae family and their transferability to Arachis hypogaea, groundnut. Plant Science pulished online 6th October 2007. Also printed in 2008. (DOI: 10.1016/j.plantsci.2007.09.014). Not open access: view abstract
Mace ES, Varshney RK, Mahalakshmi V, Seetha K, Gafoor A, Leeladevi Y and Crouch JH (2007). In silico development of simple sequence repeat markers within the aeschynomenoid/dalbergoid and genistoid clades of the Leguminosae family and their transferability to Arachis hypogaea, groundnut. Plant Science pulished online 6th October 2007. Also printed in 2008. (DOI: 10.1016/j.plantsci.2007.09.014). Not open access: view abstract
Genetic diversity for aluminium tolerance in sorghum
Caniato FF, Guimarães CT, Schaffert RE, Alves VMC, Kochian LV, Borém A, Klein PE and Magalhães JV (2007). Genetic diversity for aluminium tolerance in sorghum. Theoretical and Applied Genetics 114(5):863–876. (DOI: 10.1007/s00122-006-0485-x). Not open access: view abstract
Caniato FF, Guimarães CT, Schaffert RE, Alves VMC, Kochian LV, Borém A, Klein PE and Magalhães JV (2007). Genetic diversity for aluminium tolerance in sorghum. Theoretical and Applied Genetics 114(5):863–876. (DOI: 10.1007/s00122-006-0485-x). Not open access: view abstract
Data resolution: a jackknife procedure for determining the consistency of molecular marker datasets
van Hintum T (2007). Data resolution: a jackknife procedure for determining the consistency of molecular marker datasets. Theoretical and Applied Genetics 115 (3):343–349. (DOI: 10.1007/s00122-007-0566-5).
The results of genetic diversity studies using molecular markers not only depend on the biology of the studied objects but also on the quality of the marker data. Poor data quality may hamper the correct answering of biological questions. A new statistic is proposed to estimate the quality of a marker data set with regard to its ability to describe the structure of the biological material under study. This statistic is called data resolution (DR). It is calculated by splitting a marker data set at random into two sets each with half the number of markers. In each set, similarities between all pairs of objects are calculated.
van Hintum T (2007). Data resolution: a jackknife procedure for determining the consistency of molecular marker datasets. Theoretical and Applied Genetics 115 (3):343–349. (DOI: 10.1007/s00122-007-0566-5).
The results of genetic diversity studies using molecular markers not only depend on the biology of the studied objects but also on the quality of the marker data. Poor data quality may hamper the correct answering of biological questions. A new statistic is proposed to estimate the quality of a marker data set with regard to its ability to describe the structure of the biological material under study. This statistic is called data resolution (DR). It is calculated by splitting a marker data set at random into two sets each with half the number of markers. In each set, similarities between all pairs of objects are calculated.
Genetic distance sampling - a novel sampling method for obtaining core collections using genetic distances with an application to cultivated lettuce
Jansen J and van Hintum T (2007). Genetic distance sampling - a novel sampling method for obtaining core collections using genetic distances with an application to cultivated lettuce. Theoretical and Applied Genetics 114(3):421–428. (DOI: 10.1007/s00122-006-0433-9). Not open access: view abstract
Jansen J and van Hintum T (2007). Genetic distance sampling - a novel sampling method for obtaining core collections using genetic distances with an application to cultivated lettuce. Theoretical and Applied Genetics 114(3):421–428. (DOI: 10.1007/s00122-006-0433-9). Not open access: view abstract
Characterization of drought stress environments for upland rice and maize in central Brazil
Heinemann A, Dingkuhn M, Luquet M, Combres JC and Chapman SC (2007). Characterization of drought stress environments for upland rice and maize in central Brazil. Euphytica published online 10th October 2007. Also printed in 2008. (DOI: 10.1007/s10681-007-9579-z). Not open access: view abstract
Heinemann A, Dingkuhn M, Luquet M, Combres JC and Chapman SC (2007). Characterization of drought stress environments for upland rice and maize in central Brazil. Euphytica published online 10th October 2007. Also printed in 2008. (DOI: 10.1007/s10681-007-9579-z). Not open access: view abstract
Genetic diversity of cowpea [Vigna unguiculata (L.) Walp.] in four West African and USA breeding programs as determined by AFLP analysis
Fang J, Chao CCT, Roberts PA and Ehlers JD (2007). Genetic diversity of cowpea [Vigna unguiculata (L.) Walp.] in four West African and USA breeding programs as determined by AFLP analysis. Genetic Resources and Crop Evolution 54(6):1197–1209. (DOI: 10.1007/s10722-006-9101-9). Not open access: view abstract
Fang J, Chao CCT, Roberts PA and Ehlers JD (2007). Genetic diversity of cowpea [Vigna unguiculata (L.) Walp.] in four West African and USA breeding programs as determined by AFLP analysis. Genetic Resources and Crop Evolution 54(6):1197–1209. (DOI: 10.1007/s10722-006-9101-9). Not open access: view abstract
