Journal articles 2009
Documents
Novel approaches in plant breeding for rhizosphere-related traits
Wissuwa M, Mazzola M and Picard C (2009). Novel approaches in plant breeding for rhizosphere-related traits. Plant Soil 321:409-430 (DOI: 10.1007/s11104-008-9693-2). Not open access: view abstract
Wissuwa M, Mazzola M and Picard C (2009). Novel approaches in plant breeding for rhizosphere-related traits. Plant Soil 321:409-430 (DOI: 10.1007/s11104-008-9693-2). Not open access: view abstract
Mapping of QTLs for lateral and axile root growth of tropical maize
Trachsel S, Messmer R, Stamp P Hund A (2009). Mapping of QTLs for lateral and axile root growth of tropical maize. Theoretical and Applied Genetics 119 (8):1413–1424 (DOI:10.1007/s00122-009-1144-9). Not open access: view abstract
Trachsel S, Messmer R, Stamp P Hund A (2009). Mapping of QTLs for lateral and axile root growth of tropical maize. Theoretical and Applied Genetics 119 (8):1413–1424 (DOI:10.1007/s00122-009-1144-9). Not open access: view abstract
Exploiting rice-sorghum synteny for targeted development of EST-SSRs to enrich the sorghum genetic linkage map
Ramu P, Kassahun B, Senthilvel S, Ashok Kumar C, Jayashree B, Folkertsma RT, Ananda Reddy L, Kuruvinashetti MS, Haussmann BIG and Hash CT (2009). Exploiting rice-sorghum synteny for targeted development of EST-SSRs to enrich the sorghum genetic linkage map. Theoretical and Applied Genetics 119 (7):1193–1204 (DOI 10.1007/s00122-009-1120-4). Not open access: view abstract
Ramu P, Kassahun B, Senthilvel S, Ashok Kumar C, Jayashree B, Folkertsma RT, Ananda Reddy L, Kuruvinashetti MS, Haussmann BIG and Hash CT (2009). Exploiting rice-sorghum synteny for targeted development of EST-SSRs to enrich the sorghum genetic linkage map. Theoretical and Applied Genetics 119 (7):1193–1204 (DOI 10.1007/s00122-009-1120-4). Not open access: view abstract
Use of selection with recurrent backcrossing and QTL mapping to identify loci contributing to southern leaf blight resistance in a highly resistant maize line
Zwonitzer J, Bubeck D, Bhattramakki D, Goodman M, Arellano C and Balint-Kurti P (2009). Use of selection with recurrent backcrossing and QTL mapping to identify loci contributing to southern leaf blight resistance in a highly resistant maize line. Theoretical and Applied Genetics 118 (5):911–925 (DOI: 10.1007/s00122-008-0949-2). Not open access: view abstract
Zwonitzer J, Bubeck D, Bhattramakki D, Goodman M, Arellano C and Balint-Kurti P (2009). Use of selection with recurrent backcrossing and QTL mapping to identify loci contributing to southern leaf blight resistance in a highly resistant maize line. Theoretical and Applied Genetics 118 (5):911–925 (DOI: 10.1007/s00122-008-0949-2). Not open access: view abstract
Core Hunter: an algorithm for sampling genetic resources based on multiple genetic measures
Thachuk C, Crossa J, Franco J, Dreisigacker S, Warburton M and Davenport GF (2009). Core Hunter: an algorithm for sampling genetic resources based on multiple genetic measures. BMC Bioinformatics 10:243 (DOI: 10.1186/1471-2105-10-243).
Thachuk C, Crossa J, Franco J, Dreisigacker S, Warburton M and Davenport GF (2009). Core Hunter: an algorithm for sampling genetic resources based on multiple genetic measures. BMC Bioinformatics 10:243 (DOI: 10.1186/1471-2105-10-243).
Perl module and PISE wrappers for the integrated analysis of sequence data and SNP features
Jayashree B, BhanuPrakash A, Anusha J, Srinivasa Reddy P, Nayak S, Varshney RK (2009). Perl module and PISE wrappers for the integrated analysis of sequence data and SNP features. BMC Research Notes 2:92 (DOI: 10.1186/1756-0500-2-92).
Jayashree B, BhanuPrakash A, Anusha J, Srinivasa Reddy P, Nayak S, Varshney RK (2009). Perl module and PISE wrappers for the integrated analysis of sequence data and SNP features. BMC Research Notes 2:92 (DOI: 10.1186/1756-0500-2-92).
Development and assessment of diversity arrays technology (DArT) for high-throughput DNA analyses in Musa
Risterucci A.M., Hippolyte I., Perrier X., Xia L., Caig V., Evers M., Huttner E., Kilian A., Glaszmann J.C., 2009. Development and assessment of diversity arrays technology (DArT) for high-throughput DNA analyses in Musa. Theoretical and Applied Genetics,119(6):1093-1103. (DOI: 10.1007/s00122-009-1111-5). Not open access: view abstract
Risterucci A.M., Hippolyte I., Perrier X., Xia L., Caig V., Evers M., Huttner E., Kilian A., Glaszmann J.C., 2009. Development and assessment of diversity arrays technology (DArT) for high-throughput DNA analyses in Musa. Theoretical and Applied Genetics,119(6):1093-1103. (DOI: 10.1007/s00122-009-1111-5). Not open access: view abstract
Stress-related genes define essential steps in the response of maize seedlings to smoke-water
Soós V, Sebestyén E, Juhász A, Pintér J, Light ME, Van Staden J and Balázs E (2009). Stress-related genes define essential steps in the response of maize seedlings to smoke-water. Functional and Integrative Genomics 9(2):231–242. (DOI: 10.1007/s10142-008-0105-8). Not open access: view abstract
Soós V, Sebestyén E, Juhász A, Pintér J, Light ME, Van Staden J and Balázs E (2009). Stress-related genes define essential steps in the response of maize seedlings to smoke-water. Functional and Integrative Genomics 9(2):231–242. (DOI: 10.1007/s10142-008-0105-8). Not open access: view abstract
Physical mapping of a 7A.7D translocation in the wheat–Thinopyrum ponticum partial amphiploid BE-1 using multicolour genomic in situ hybridization and microsatellite marker analysis
Sepsi A, Molnár I and Molnár-Láng M (2009). Physical mapping of a 7A.7D translocation in the wheat–Thinopyrum ponticum partial amphiploid BE-1 using multicolour genomic in situ hybridization and microsatellite marker analysis. Genome 52:748–754. (DOI: 10.1139/G09-047). Not open access: view abstract.
Sepsi A, Molnár I and Molnár-Láng M (2009). Physical mapping of a 7A.7D translocation in the wheat–Thinopyrum ponticum partial amphiploid BE-1 using multicolour genomic in situ hybridization and microsatellite marker analysis. Genome 52:748–754. (DOI: 10.1139/G09-047). Not open access: view abstract.
SSR markers reveal diversity in Guinea yam (Dioscorea cayenensis/D. rotundata) core set
Obidiegwu JE, Kolesnikova-Allen M, Ene-obong EE, Muoneke CO and Asiedu R (2009). SSR markers reveal diversity in Guinea yam (Dioscorea cayenensis/D. rotundata) core set. African Journal of Biotechnology 8(12):2730–2739 (DOI: 10.5897/AJB09.184). (2005-03d)
Abstract: The genetic diversity of 219 accessions of Guinea yam germplasm from Benin, Congo, Côte d' Ivoire, Equatorial Guinea, Gabon, Ghana, Nigeria, Sierra Leone and Togo was accessed using 15 microsatellite loci. High diversity of 0.677 was found among the accessions. An allelic average of 8.06 and polymorphic information content (PIC) value of 0.65 was observed for the markers. The observed heterozygosity value of 0.563 suggests that spontaneous hybridization must have contributed to the ancestry of some of the accessions and improvement by farmers must have been far more often by selection of somatic mutants. The twenty distinct cluster groups generated by the radial phylogram shows that Dioscorea cayenensis and D. rotundata are distinct species with intermediate hybrid forms. There was no relationship between relatedness of the accessions and their geographical area of origin. This study contributes to an increased understanding of the genetic organisation of the core germplasm.
Obidiegwu JE, Kolesnikova-Allen M, Ene-obong EE, Muoneke CO and Asiedu R (2009). SSR markers reveal diversity in Guinea yam (Dioscorea cayenensis/D. rotundata) core set. African Journal of Biotechnology 8(12):2730–2739 (DOI: 10.5897/AJB09.184). (2005-03d)
Abstract: The genetic diversity of 219 accessions of Guinea yam germplasm from Benin, Congo, Côte d' Ivoire, Equatorial Guinea, Gabon, Ghana, Nigeria, Sierra Leone and Togo was accessed using 15 microsatellite loci. High diversity of 0.677 was found among the accessions. An allelic average of 8.06 and polymorphic information content (PIC) value of 0.65 was observed for the markers. The observed heterozygosity value of 0.563 suggests that spontaneous hybridization must have contributed to the ancestry of some of the accessions and improvement by farmers must have been far more often by selection of somatic mutants. The twenty distinct cluster groups generated by the radial phylogram shows that Dioscorea cayenensis and D. rotundata are distinct species with intermediate hybrid forms. There was no relationship between relatedness of the accessions and their geographical area of origin. This study contributes to an increased understanding of the genetic organisation of the core germplasm.
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