Journal articles 2012
Documents
ParentChecker: a computer program for automated inference of missing parental genotype calls and linkage phase correction
Hu Z, Ehlers JD, Roberts PA, Close TJ, Lucas MR, Wanamaker S, Xu S (2012). ParentChecker: a computer program for automated inference of missing parental genotype calls and linkage phase correction. BMC Genetics 13:9. (DOI: 10.1186/1471-2156-13-9). (G6010.02/G7010.07.01).
ParentChecker is a user-friendly tool that uses the segregation patterns of progeny to infer missing genotype information of parental lines that have been used to construct a mapping population. It can also be used to automate correction of linkage phase errors in genotypic data that are in ABH format.
ParentChecker efficiently improves genetic mapping datasets for cases where parental information is incomplete by automating the process of inferring missing genotypes of inbred mapping populations and can also be used to correct linkage phase errors in ABH formatted datasets.
Hu Z, Ehlers JD, Roberts PA, Close TJ, Lucas MR, Wanamaker S, Xu S (2012). ParentChecker: a computer program for automated inference of missing parental genotype calls and linkage phase correction. BMC Genetics 13:9. (DOI: 10.1186/1471-2156-13-9). (G6010.02/G7010.07.01).
ParentChecker is a user-friendly tool that uses the segregation patterns of progeny to infer missing genotype information of parental lines that have been used to construct a mapping population. It can also be used to automate correction of linkage phase errors in genotypic data that are in ABH format.
ParentChecker efficiently improves genetic mapping datasets for cases where parental information is incomplete by automating the process of inferring missing genotypes of inbred mapping populations and can also be used to correct linkage phase errors in ABH formatted datasets.
A mixed model QTL analysis for sugarcane multiple-harvest-location trial data
Pastina MM, Malosetti M, Gazaffi R, Mollinari M, Margarido GRA, Oliveira KM, Pinto LR, Souza AP, van Eeuwijk FA and Garcia AAF (2012). A mixed model QTL analysis for sugarcane multiple-harvest-location trial data. Theoretical and Applied Genetics 124 (5) 835–849. (DOI 10.1007/s00122-011-1748-8).
Pastina MM, Malosetti M, Gazaffi R, Mollinari M, Margarido GRA, Oliveira KM, Pinto LR, Souza AP, van Eeuwijk FA and Garcia AAF (2012). A mixed model QTL analysis for sugarcane multiple-harvest-location trial data. Theoretical and Applied Genetics 124 (5) 835–849. (DOI 10.1007/s00122-011-1748-8).
Fine mapping of QTLs for rice grain yield under drought reveals sub-QTLs conferring a response to variable drought severities
Dixit S, Swamy BPM, Vikram P, Ahmed HU, Sta Cruz MT, Amante M, Atri D, Leung H and Kumar A (2012). Fine mapping of QTLs for rice grain yield under drought reveals sub-QTLs conferring a response to variable drought severities. Theoretical and Applied Genetics published online: 15pp (DOI 10.1007/s00122-012-1823-9). Not open access: view abstract
Dixit S, Swamy BPM, Vikram P, Ahmed HU, Sta Cruz MT, Amante M, Atri D, Leung H and Kumar A (2012). Fine mapping of QTLs for rice grain yield under drought reveals sub-QTLs conferring a response to variable drought severities. Theoretical and Applied Genetics published online: 15pp (DOI 10.1007/s00122-012-1823-9). Not open access: view abstract
Lower soil moisture threshold for transpiration decline under water deficit correlates with lower canopy conductance and higher transpiration efficiency in drought-tolerant cowpea
Belko N, Zaman-Allah M, Cisse N, Diop NN, Zombre G, Ehlers JD and Vadez (2012). Lower soil moisture threshold for transpiration decline under water deficit correlates with lower canopy conductance and higher transpiration efficiency in drought-tolerant cowpea. Functional Plant Biology 39(4):306–322. (DOI: 10.1071/FP11282). (G4009.07.04). Not open access: view abstract
Belko N, Zaman-Allah M, Cisse N, Diop NN, Zombre G, Ehlers JD and Vadez (2012). Lower soil moisture threshold for transpiration decline under water deficit correlates with lower canopy conductance and higher transpiration efficiency in drought-tolerant cowpea. Functional Plant Biology 39(4):306–322. (DOI: 10.1071/FP11282). (G4009.07.04). Not open access: view abstract
Selection strategy for sorghum targeting phosphorus-limited environments in West Africa: analysis of multi-environment experiments
Leiser, WL, Rattunde HFW, Piepho H-P, Weltzien E, Diallo A, Melchinger AE, Parzies HK, Haussmann BIG (2012). Selection strategy for sorghum targeting phosphorus-limited environments in West Africa: analysis of multi-environment experiments. Crop Science 52(6):2517–2527. (DOI: 10.2135/cropsci2012.02.0139). (G7010.03.03). Not open access: view abstract
Leiser, WL, Rattunde HFW, Piepho H-P, Weltzien E, Diallo A, Melchinger AE, Parzies HK, Haussmann BIG (2012). Selection strategy for sorghum targeting phosphorus-limited environments in West Africa: analysis of multi-environment experiments. Crop Science 52(6):2517–2527. (DOI: 10.2135/cropsci2012.02.0139). (G7010.03.03). Not open access: view abstract
Analysis of quantitative disease resistance to southern leaf blight and of multiple disease resistance in maize, using near-isogenic lines
Belcher AR, Zwonitzer JC, Santa Cruz J, Krakowsky MD, Chung CL, Nelson R, Arellano C, and Balint-Kurti PJ. (2012). Analysis of quantitative disease resistance to southern leaf blight and of multiple disease resistance in maize, using near-isogenic lines. Theoretical and Applied Genetics 124(3) 433–445, (DOI: 10.1007/s00122-011-1718-1). Not open access: view abstract
Belcher AR, Zwonitzer JC, Santa Cruz J, Krakowsky MD, Chung CL, Nelson R, Arellano C, and Balint-Kurti PJ. (2012). Analysis of quantitative disease resistance to southern leaf blight and of multiple disease resistance in maize, using near-isogenic lines. Theoretical and Applied Genetics 124(3) 433–445, (DOI: 10.1007/s00122-011-1718-1). Not open access: view abstract
Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers
Varshney RK, Chen W, Li Y, Bharti AK, Saxena RK, Schlueter JA, Donoghue MTA, Azam S, Fan G, Whaley AM, Farmer AD, Sheridan J, Iwata A, Tuteja R, Penmetsa RV, Wu W, Upadhyaya HD, Yang S-P, Shah T, Saxena KB, Michael T, McCombie WR, Yang B, Zhang G, Yang H, Wang J, Spillane C, Cook DR, May GD, Xu X & Jackson SA (2012). Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotechnology 30: 83–89. Also published online November 2011. (DOI:10.1038/nbt.2022).
Varshney RK, Chen W, Li Y, Bharti AK, Saxena RK, Schlueter JA, Donoghue MTA, Azam S, Fan G, Whaley AM, Farmer AD, Sheridan J, Iwata A, Tuteja R, Penmetsa RV, Wu W, Upadhyaya HD, Yang S-P, Shah T, Saxena KB, Michael T, McCombie WR, Yang B, Zhang G, Yang H, Wang J, Spillane C, Cook DR, May GD, Xu X & Jackson SA (2012). Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotechnology 30: 83–89. Also published online November 2011. (DOI:10.1038/nbt.2022).
Identifying novel QTLs for submergence tolerance in rice cultivars IR72 and Madabaru
Septiningsih EM, Sanchez DL, Singh N, Sendon PMD, Pamplona AM, Heuer S and Mackill DJ (2012). Identifying novel QTLs for submergence tolerance in rice cultivars IR72 and Madabaru. Theoretical and Applied Genetics 124(5):867–874. (DOI 10.1007/s00122-011-1751-0). Not open access: view abstract
Septiningsih EM, Sanchez DL, Singh N, Sendon PMD, Pamplona AM, Heuer S and Mackill DJ (2012). Identifying novel QTLs for submergence tolerance in rice cultivars IR72 and Madabaru. Theoretical and Applied Genetics 124(5):867–874. (DOI 10.1007/s00122-011-1751-0). Not open access: view abstract
An international reference consensus genetic map with 897 marker loci based on 11 mapping populations for tetraploid groundnut (Arachis hypogaea L.)
(2012). An international reference consensus genetic map with 897 marker loci based on 11 mapping populations for tetraploid groundnut (Arachis hypogaea L.). PLoS ONE 7(7):e41213. (DOI:10.1371/journal.pone.0041213).
(2012). An international reference consensus genetic map with 897 marker loci based on 11 mapping populations for tetraploid groundnut (Arachis hypogaea L.). PLoS ONE 7(7):e41213. (DOI:10.1371/journal.pone.0041213).
Genetic insight into yield-associated traits of wheat grown in multiple rain-fed environments
Wu X, Chang X, Jing R (2012). Genetic insight into yield-associated traits of wheat grown in multiple rain-fed environments. PLoS ONE 7(2):e31249 (published online). (DOI:10.1371/journal.pone.0031249).
Wu X, Chang X, Jing R (2012). Genetic insight into yield-associated traits of wheat grown in multiple rain-fed environments. PLoS ONE 7(2):e31249 (published online). (DOI:10.1371/journal.pone.0031249).
