Journal articles 2012
Documents
Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers
Varshney RK, Chen W, Li Y, Bharti AK, Saxena RK, Schlueter JA, Donoghue MTA, Azam S, Fan G, Whaley AM, Farmer AD, Sheridan J, Iwata A, Tuteja R, Penmetsa RV, Wu W, Upadhyaya HD, Yang S-P, Shah T, Saxena KB, Michael T, McCombie WR, Yang B, Zhang G, Yang H, Wang J, Spillane C, Cook DR, May GD, Xu X & Jackson SA (2012). Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotechnology 30: 83–89. Also published online November 2011. (DOI:10.1038/nbt.2022).
Varshney RK, Chen W, Li Y, Bharti AK, Saxena RK, Schlueter JA, Donoghue MTA, Azam S, Fan G, Whaley AM, Farmer AD, Sheridan J, Iwata A, Tuteja R, Penmetsa RV, Wu W, Upadhyaya HD, Yang S-P, Shah T, Saxena KB, Michael T, McCombie WR, Yang B, Zhang G, Yang H, Wang J, Spillane C, Cook DR, May GD, Xu X & Jackson SA (2012). Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotechnology 30: 83–89. Also published online November 2011. (DOI:10.1038/nbt.2022).
Comparative transcriptome analysis of AP2/EREBP gene family under normal and hormone treatments, and under two drought stresses in NILs setup by Aday Selection and IR64
Sharoni AM, Nuruzzaman M, Satoh K, Moumeni A, Attia K, Venuprasad R, Serraj R, Kumar A, Leung H, RaWul Islam AKM, Kikuchi S (2012). Comparative transcriptome analysis of AP2/EREBP gene family under normal and hormone treatments, and under two drought stresses in NILs setup by Aday Selection and IR64. Molecular Genetics and Genomics 287(1):1–19. (DOI: 10.1007/s00438-011-0659-3).
Sharoni AM, Nuruzzaman M, Satoh K, Moumeni A, Attia K, Venuprasad R, Serraj R, Kumar A, Leung H, RaWul Islam AKM, Kikuchi S (2012). Comparative transcriptome analysis of AP2/EREBP gene family under normal and hormone treatments, and under two drought stresses in NILs setup by Aday Selection and IR64. Molecular Genetics and Genomics 287(1):1–19. (DOI: 10.1007/s00438-011-0659-3).
The cassava genome: current progress, future directions
Prochnik S, Reddy Marri P, Desany B, Rabinowicz PD, Kodira C, Mohiuddin M, Rodriguez F, Fauquet C, Tohme J, Harkins T, Rokhsar DS, Rounsley S (2012). The cassava genome: current progress, future directions. Tropical Plant Biology published online: 7pp. (DOI 10.1007/s12042-011-9088-z).
Prochnik S, Reddy Marri P, Desany B, Rabinowicz PD, Kodira C, Mohiuddin M, Rodriguez F, Fauquet C, Tohme J, Harkins T, Rokhsar DS, Rounsley S (2012). The cassava genome: current progress, future directions. Tropical Plant Biology published online: 7pp. (DOI 10.1007/s12042-011-9088-z).
A mixed model QTL analysis for sugarcane multiple-harvest-location trial data
Pastina MM, Malosetti M, Gazaffi R, Mollinari M, Margarido GRA, Oliveira KM, Pinto LR, Souza AP, van Eeuwijk FA and Garcia AAF (2012). A mixed model QTL analysis for sugarcane multiple-harvest-location trial data. Theoretical and Applied Genetics 124 (5) 835–849. (DOI 10.1007/s00122-011-1748-8).
Pastina MM, Malosetti M, Gazaffi R, Mollinari M, Margarido GRA, Oliveira KM, Pinto LR, Souza AP, van Eeuwijk FA and Garcia AAF (2012). A mixed model QTL analysis for sugarcane multiple-harvest-location trial data. Theoretical and Applied Genetics 124 (5) 835–849. (DOI 10.1007/s00122-011-1748-8).
Development and characterization of highly polymorphic long TC repeat microsatellite markers for genetic analysis of peanut
Macedo SE, Moretzsohn MC, Leal-Bertioli SC, Alves DM, Gouvea EG, Azevedo VC, Bertioli DJ (2012). Development and characterization of highly polymorphic long TC repeat microsatellite markers for genetic analysis of peanut. BMC Research Notes 5:86 10pp. (DOI:10.1186/1756-0500-5-86). (G6010.01)
Macedo SE, Moretzsohn MC, Leal-Bertioli SC, Alves DM, Gouvea EG, Azevedo VC, Bertioli DJ (2012). Development and characterization of highly polymorphic long TC repeat microsatellite markers for genetic analysis of peanut. BMC Research Notes 5:86 10pp. (DOI:10.1186/1756-0500-5-86). (G6010.01)
Foundation characteristics of edible Musa triploids revealed from allelic distribution of SSR markers
Hippolyte I, Jenny C, Gardes L, Bakry F, Rivallan R, Pomies V, Cubry P, Tomekpe K, Risterucci AM, Roux N, Rouard M, Arnaud E, Kolesnikova-Allen M, Perrier X (2012). Foundation characteristics of edible Musa triploids revealed from allelic distribution of SSR markers. Annals of Botany published online: 15pp. (DOI:10.1093/aob/mcs010)
Hippolyte I, Jenny C, Gardes L, Bakry F, Rivallan R, Pomies V, Cubry P, Tomekpe K, Risterucci AM, Roux N, Rouard M, Arnaud E, Kolesnikova-Allen M, Perrier X (2012). Foundation characteristics of edible Musa triploids revealed from allelic distribution of SSR markers. Annals of Botany published online: 15pp. (DOI:10.1093/aob/mcs010)
Fostered and left behind alleles in peanut: interspecific QTL mapping reveals footprints of domestication and useful natural variation for breeding
Foncéka D, Tossim HA, Rivallan R, Vignes H, Faye I, Ndoye O, Moretzsohn MC, Bertioli DJ, Glaszmann JC, Courtois B, Rami JF (2012). Fostered and left behind alleles in peanut: interspecific QTL mapping reveals footprints of domestication and useful natural variation for breeding. BMC Plant Biology 2012, 12:26 45pp. (DOI: 10.1186/1471-2229-12-26, ISSN 1471-2229).
Foncéka D, Tossim HA, Rivallan R, Vignes H, Faye I, Ndoye O, Moretzsohn MC, Bertioli DJ, Glaszmann JC, Courtois B, Rami JF (2012). Fostered and left behind alleles in peanut: interspecific QTL mapping reveals footprints of domestication and useful natural variation for breeding. BMC Plant Biology 2012, 12:26 45pp. (DOI: 10.1186/1471-2229-12-26, ISSN 1471-2229).
Genetic diversity of provitamin A cassava in Uganda
Esuma W, Rubaihayo P, Pariyo A, Kawuki R, Wanjala B, Nzuki I, Harvey JJW, Baguma Y (2012). Genetic diversity of provitamin A cassava in Uganda. Journal of Plant Studies 1(1):60–71 (DOI: 10.5539/jps.v1n1p60).
Esuma W, Rubaihayo P, Pariyo A, Kawuki R, Wanjala B, Nzuki I, Harvey JJW, Baguma Y (2012). Genetic diversity of provitamin A cassava in Uganda. Journal of Plant Studies 1(1):60–71 (DOI: 10.5539/jps.v1n1p60).
Genetic structure, linkage disequilibrium and signature of selection in sorghum; lessons from physically anchored DArT markers
Bouchet S, Pot D, Deu M, Rami JF, Billot C, Perrier CX, Rivallan R, Gardes L, Xia L, Wenzl P, Kilian K, Glaszmann JC (2012). Genetic structure, linkage disequilibrium and signature of selection in sorghum; lessons from physically anchored DArT markers. PLoS ONE 7(3):e33470 (DOI:10.1371/journal.pone.0033470).
Bouchet S, Pot D, Deu M, Rami JF, Billot C, Perrier CX, Rivallan R, Gardes L, Xia L, Wenzl P, Kilian K, Glaszmann JC (2012). Genetic structure, linkage disequilibrium and signature of selection in sorghum; lessons from physically anchored DArT markers. PLoS ONE 7(3):e33470 (DOI:10.1371/journal.pone.0033470).
Development of a Mesoamerican intra-genepool genetic map for quantitative trait loci detection in a drought tolerant × susceptible common bean (Phaseolus vulgaris L.) cross.
Blair MW, Galeano CH, Tovar E, Muñoz Torres MC, Velasco Castrillón A, Beebe SE, Rao IM (2012). Development of a Mesoamerican intra-genepool genetic map for quantitative trait loci detection in a drought tolerant × susceptible common bean (Phaseolus vulgaris L.) cross. Molecular Breeding 29(1):71–88 (DOI 10.1007/s11032-010-9527-9). Also published online in 2010.
Blair MW, Galeano CH, Tovar E, Muñoz Torres MC, Velasco Castrillón A, Beebe SE, Rao IM (2012). Development of a Mesoamerican intra-genepool genetic map for quantitative trait loci detection in a drought tolerant × susceptible common bean (Phaseolus vulgaris L.) cross. Molecular Breeding 29(1):71–88 (DOI 10.1007/s11032-010-9527-9). Also published online in 2010.
