Journal articles 2012
Documents
Genetic and physical mapping of candidate genes for resistance to Fusarium oxysporum f.sp. tracheiphilum Race 3 in cowpea [Vigna unguiculata (L.) Walp]
Pottorff M, Wanamaker S, Ma YQ, Ehlers JD, Roberts PA, Close TJ (2012). Genetic and physical mapping of candidate genes for resistance to Fusarium oxysporum f.sp. tracheiphilum Race 3 in cowpea [Vigna unguiculata (L.) Walp]. PLoS ONE 7(7):e41600. (DOI: 10.1371/journal.pone.0041600). (G6010.02/G7010.07.01).
Fusarium oxysporum f.sp. tracheiphilum (Fot) is a soil-borne fungal pathogen that causes vascular wilt disease in cowpea. Fot race 3 is one of the major pathogens affecting cowpea production in California. Identification of Fot race 3 resistance determinants will expedite delivery of improved cultivars by replacing time-consuming phenotypic screening with selection based on perfect markers, thereby generating successful cultivars in a shorter time period. Resistance to Fot race 3 was studied in the RIL population California Blackeye 27 (resistant) x 24-125B-1 (susceptible). Biparental mapping identified a Fot race 3 resistance locus, Fot3-1, which spanned 3.56 cM on linkage group one of the CB27 x 24-125B-1 genetic map.
Pottorff M, Wanamaker S, Ma YQ, Ehlers JD, Roberts PA, Close TJ (2012). Genetic and physical mapping of candidate genes for resistance to Fusarium oxysporum f.sp. tracheiphilum Race 3 in cowpea [Vigna unguiculata (L.) Walp]. PLoS ONE 7(7):e41600. (DOI: 10.1371/journal.pone.0041600). (G6010.02/G7010.07.01).
Fusarium oxysporum f.sp. tracheiphilum (Fot) is a soil-borne fungal pathogen that causes vascular wilt disease in cowpea. Fot race 3 is one of the major pathogens affecting cowpea production in California. Identification of Fot race 3 resistance determinants will expedite delivery of improved cultivars by replacing time-consuming phenotypic screening with selection based on perfect markers, thereby generating successful cultivars in a shorter time period. Resistance to Fot race 3 was studied in the RIL population California Blackeye 27 (resistant) x 24-125B-1 (susceptible). Biparental mapping identified a Fot race 3 resistance locus, Fot3-1, which spanned 3.56 cM on linkage group one of the CB27 x 24-125B-1 genetic map.
Assessment of groundnut under combined heat and drought stress
Hamidou F, Halilou O & Vadez V (2013). Assessment of groundnut under combined heat and drought stress. Journal of Agronomy and Crop Science. Pubished online. (DOI:10.1111/j.1439-037X.2012.00518.x). Also printed in 2013.
In semi-arid regions, particularly in the Sahel, water and high-temperature stress are serious constraints for groundnut production. Understanding of combined effects of heat and drought on physiological traits, yield and its attributes is of special significance for improving groundnut productivity. Two hundred and sixty-eight groundnut genotypes were evaluated in four trials under both intermittent drought and fully irrigated conditions, two of the trial being exposed to moderate temperature, while the two other trials were exposed to high temperature. The objectives were to analyse the component of the genetic variance and their interactions with water treatment, year and environment (temperature) for agronomic characteristics, to select genotypes with high pod yield under hot- and moderate-temperature conditions, or both, and to identify traits conferring heat and/or drought tolerance.
Hamidou F, Halilou O & Vadez V (2013). Assessment of groundnut under combined heat and drought stress. Journal of Agronomy and Crop Science. Pubished online. (DOI:10.1111/j.1439-037X.2012.00518.x). Also printed in 2013.
In semi-arid regions, particularly in the Sahel, water and high-temperature stress are serious constraints for groundnut production. Understanding of combined effects of heat and drought on physiological traits, yield and its attributes is of special significance for improving groundnut productivity. Two hundred and sixty-eight groundnut genotypes were evaluated in four trials under both intermittent drought and fully irrigated conditions, two of the trial being exposed to moderate temperature, while the two other trials were exposed to high temperature. The objectives were to analyse the component of the genetic variance and their interactions with water treatment, year and environment (temperature) for agronomic characteristics, to select genotypes with high pod yield under hot- and moderate-temperature conditions, or both, and to identify traits conferring heat and/or drought tolerance.
Current state-of-art of sequencing technologies for plant genomics research
Thudi M, Li Y, Jackson SA, May GD, Varshney RK (2012). Current state-of-art of sequencing technologies for plant genomics research. Briefings in Functional Genomics (2012) 11 (1): 3-11. (DOI: 10.1093/bfgp/elr045). Not open access: view abstract
Thudi M, Li Y, Jackson SA, May GD, Varshney RK (2012). Current state-of-art of sequencing technologies for plant genomics research. Briefings in Functional Genomics (2012) 11 (1): 3-11. (DOI: 10.1093/bfgp/elr045). Not open access: view abstract
Mapping QTLs for seedling traits and heat tolerance indices in common wheat
Li S-P, Chang X-P, Wang C-S and Jing R-L (2012). Mapping QTLs for seedling traits and heat tolerance indices in common wheat. Acta Botanica Boreali-Occidentalia Sinica 32(8):1525–1533. Article in Chinese with abstract in English. Not open access; view journal website. (G7010.02.01)
Li S-P, Chang X-P, Wang C-S and Jing R-L (2012). Mapping QTLs for seedling traits and heat tolerance indices in common wheat. Acta Botanica Boreali-Occidentalia Sinica 32(8):1525–1533. Article in Chinese with abstract in English. Not open access; view journal website. (G7010.02.01)
Quantitative trait loci and breeding
Fleury D, Delannay X and Langridge P (2012). Quantitative trait loci and breeding. eLS published online. (DOI: 10.1002/9780470015902.a0023712). Not open access: view abstract
Fleury D, Delannay X and Langridge P (2012). Quantitative trait loci and breeding. eLS published online. (DOI: 10.1002/9780470015902.a0023712). Not open access: view abstract
Foundation characteristics of edible Musa triploids revealed from allelic distribution of SSR markers
Hippolyte I, Jenny C, Gardes L, Bakry F, Rivallan R, Pomies V, Cubry P, Tomekpe K, Risterucci AM, Roux N, Rouard M, Arnaud E, Kolesnikova-Allen M, Perrier X (2012). Foundation characteristics of edible Musa triploids revealed from allelic distribution of SSR markers. Annals of Botany published online: 15pp. (DOI:10.1093/aob/mcs010)
Hippolyte I, Jenny C, Gardes L, Bakry F, Rivallan R, Pomies V, Cubry P, Tomekpe K, Risterucci AM, Roux N, Rouard M, Arnaud E, Kolesnikova-Allen M, Perrier X (2012). Foundation characteristics of edible Musa triploids revealed from allelic distribution of SSR markers. Annals of Botany published online: 15pp. (DOI:10.1093/aob/mcs010)
Opportunities for exploiting variations in haulm fodder traits of intermittent drought tolerant lines in a reference collection of groundnut (Arachis hypogeae L.)
Blümmel M, Ratnakumar P, and Vadez V (2012). Opportunities for exploiting variations in haulm fodder traits of intermittent drought tolerant lines in a reference collection of groundnut (Arachis hypogeae L.). Field Crops Research 126:200–206, ISSN 0378-4290. (DOI:10.1016/j.fcr.2011.10.004). Not open access: view abstract
Blümmel M, Ratnakumar P, and Vadez V (2012). Opportunities for exploiting variations in haulm fodder traits of intermittent drought tolerant lines in a reference collection of groundnut (Arachis hypogeae L.). Field Crops Research 126:200–206, ISSN 0378-4290. (DOI:10.1016/j.fcr.2011.10.004). Not open access: view abstract
Studying the genetic basis of drought tolerance in sorghum by managed stress trials and adjustments for phenological and plant height differences
Sabadin PK, Malosetti M, Boer MP, Tardin FD, Santos FG, Guimarães CT, Gomide RL, Andrade CLT, Albuquerque PEP, Caniato FF, Mollinari M, Margarido GRA, Oliveira BF, Schaffert RE, Garcia AAF, van Eeuwijk FA, Magalhães JV (2012). Studying the genetic basis of drought tolerance in sorghum by managed stress trials and adjustments for phenological and plant height differences. Theoretical and Applied Genetics 14 pp, online first. Issn: 0040-5752. (DOI: 10.1007/s00122-012-1795-9). Not open access: view abstract
Sabadin PK, Malosetti M, Boer MP, Tardin FD, Santos FG, Guimarães CT, Gomide RL, Andrade CLT, Albuquerque PEP, Caniato FF, Mollinari M, Margarido GRA, Oliveira BF, Schaffert RE, Garcia AAF, van Eeuwijk FA, Magalhães JV (2012). Studying the genetic basis of drought tolerance in sorghum by managed stress trials and adjustments for phenological and plant height differences. Theoretical and Applied Genetics 14 pp, online first. Issn: 0040-5752. (DOI: 10.1007/s00122-012-1795-9). Not open access: view abstract
Molecular marker analysis and validation of resistance to cassava mosaic disease in elite cassava genotypes in Nigeria
Okogbenin E, Egesi CN, Olasanmi B, Ogundapo O, Kahya S, Hurtado P, Marin J, Akinbo O, Mba C, Gomez H, de Vicente C, Baiyeri S, Uguru M, Ewa F, Fregene M (2012). Molecular marker analysis and validation of resistance to cassava mosaic disease in elite cassava genotypes in Nigeria. Crop Science 52(6): 2576–2586. (DOI: 10.2135/cropsci2011.11.0586). (G7009.10/G7010.01.02). Not open access: view abstract
Okogbenin E, Egesi CN, Olasanmi B, Ogundapo O, Kahya S, Hurtado P, Marin J, Akinbo O, Mba C, Gomez H, de Vicente C, Baiyeri S, Uguru M, Ewa F, Fregene M (2012). Molecular marker analysis and validation of resistance to cassava mosaic disease in elite cassava genotypes in Nigeria. Crop Science 52(6): 2576–2586. (DOI: 10.2135/cropsci2011.11.0586). (G7009.10/G7010.01.02). Not open access: view abstract
Whole-genome scanning for mapping determinacy in Pigeonpea (Cajanus spp.)
Mir RR, Saxena RK, Saxena KB, Upadhyaya HD, Kilian A, Cook DR, Varshney RK (2012). Whole-genome scanning for mapping determinacy in Pigeonpea (Cajanus spp.). Plant Breeding Published online. (DOI: 10.1111/j.1439-0523.2012.02009.x). View abstract
Mir RR, Saxena RK, Saxena KB, Upadhyaya HD, Kilian A, Cook DR, Varshney RK (2012). Whole-genome scanning for mapping determinacy in Pigeonpea (Cajanus spp.). Plant Breeding Published online. (DOI: 10.1111/j.1439-0523.2012.02009.x). View abstract