DAY 1
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Session I: Exploiting Allelic Diversity
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Hari Upadhyaya, ICRISAT
Completing genotyping (barley, wheat, sorghum, chickpea)
Andy Pereira, WUR
Systematic evaluation of rice mutant collections for conditional phenotypes with emphasis on stress tolerance
**Mark Sawkins, CIMMYT
Development of Informative Markers through Association Mapping in Maize to Improve Drought Tolerance in Cereals
Richard Bruskiewich, IRRI
Development and application of the GenerationCP domain models
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Session II: Gene Discovery and Mining
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Mathias Lorieux, CIAT
Exploring natural genetic variation: developing genomic resources and introgression lines for four AA genome rice relatives
Michael Baum, ICARDA
Allele Mining Based on Non-Coding Regulatory SNPs in barley germplasm
**Abdelbagi M. Ismail, IRRI
Revitalizing marginal lands: discovery of genes for tolerance of saline and phosphorus deficient soils to enhance and sustain productivity
Graham McLaren, IRRI
Improvement of quality of existing databases
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Session III: Marker Development
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Rebecca Nelson, Cornell Targeted discovery of superior disease QTL, alleles in the maize and rice genomes
**Martin Fregene, CIAT Development of low-cost technologies for pyramiding useful genes from wild relatives of cassava into elite progenitors
Scott Chapman, UQ/CSIRO Optimizing marker-assisted breeding systems for assisted breeding systems for drought tolerance in cereals through linkage of drought tolerance in cereals through linkage of physiological and genetic models
**Tom Hazekamp, IPGRI The Generation Challenge Programme Information Infrastructure
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Session IV: Molecular Breeding and Delivery Plans
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**David Bertioli, UCB Unlocking the genetic diversity in peanut's wild relatives with genomic and genetic tools Zhi-Kang LI, CAAS Drought Tolerant Rice Cultivars for North China and South/Southeast Asia by Highly Efficient Pyramiding of QTL's fro Diverse Origins Carmen De Vicente, GCP The GCP Strategy for Enabling The GCP Strategy for Enabling Delivery
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DAY 2
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Subprogramme 1:
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Jean Christophe Glaszmann, SP1 Leader -- Plan for the day and report of the Chennai workshop
Hari Upadhyaya, ICRISAT -- Groundnut core collection/genotyping #03f
Bonnie Furman, ICARDA -- Lentil core collection/genotyping #03e
Hari Upadhyaya, ICRISAT -- Pigeon pea core collection/genotyping #03b
Jean Christophe Glaszmann, Agropolis -- Coconut genotyping: LD assessment #03g
Marc Ghislain, CIP -- Sweet potato core collection/genotyping #03c
**Martin Fregene, CIAT -- Cassava genotyping: traditional and breeding materials #02j and #08
Susanne Dreisigacker, CIMMYT -- Maize genotyping: migrations out of America #02a and comp#14
Andrzej Kilian, DArT PL -- DArT markers #04
Marc Ghislain, CIP -- Potato genotyping: wild/traditional and breeding materials #02j and #08
**Ken McNally, IRRI -- Rice genotyping; #02c, #35 and #05; high throughput SNP development
**Ken McNally, IRRI -- EcoTILLing
**Frederico Duraes, EMBRAPA -- Phenotyping network at Embrapa
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Subprogramme 2:
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Hei Leung, SP2 Leader -- Plan for the day
Hans-Joachim Braun, CIMMYT -- Wheat genetic stock assembly and utilization
Matthew Blair, CIAT -- Legume mutant resource development/drought mapping in bean
Merideth Bonierbale, CIP -- Tuber genetic stocks and gene function validation tools
Sarah Hearne, IITA, and Tom Hash, ICRISAT -- Stress response-enriched EST resources for targeted species (cowpea and pearl millet)
Roland Schefleitner, CIP -- Validation of conserved orthologous markers
Nour Ahmadi, CIRAD -- QTL mapping for drought tolerance
**Takuji Sasaki, NIAS and Nicolas Roux, INIBAP - Targeted Musa genome sequencing and frame map construction
**Ken McNally, IRRI -
Genome-wide SNP discovery across multiple rice varieties - Pietro Piffanelli, CIRAD -- Functional genomics of cross-species resistance to fungal diseases in rice and wheat (CEREALIMMUNITY)
**Mark Sawkins, CIMMYT -- Determination of a common genetic basis for tissue growth rate under water-limited conditions across plant organs and genomes
Tiegang Lu, CAAS -- Crop gene expression profiles and stress-gene arrays
John Bennett, IRRI -- Identifying Genes Responsible for Failure of Grain Formation in Rice and Wheat under Drought
Jurandir Magalhaes, Embrapa -- Isolation and Characterization of Aluminum Tolerance Genes in the Cereals: An Integrated Functional Genomic, Molecular Genetic and Physiological Analysis
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Subprogramme 3:
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**Kazuko Yamaguchi-Shinozaki, JIRCAS -- Overview of DREB research at JIRCAS
John Bennett, IRRI -- Progress in evaluation of DREB transgenics
Willy de Greef, IPBO -- Biosafety concerns specific to the deployment of abiotic stress transgenics
Shawn Sullivan, GCP legal counsel -- Liability and redress issues related to GMO products
**Victoria Henson-Apollonio, IPGRI -- IP issues and product development pathways for molecular breeding technologies
Nollie Vera Cruz, IRRI -- Low-cost marker technologies in major cereal crops [rice, maize, and wheat ? barley and sorghum]
Festo Massawe, IITA -- Status of marker-assisted selection technologies in legumes and clonal crops [cowpea and groundnut ?chickpea, pigeonpea, lentil]
Martin Fregene, CIAT –
Status of marker-assisted selection technologies in clonal crops [cassava and banana ? yam and coconut]
Alfredo Alves, EMBRAPA -- Cassava drought physiology
Marcel de Raissac, CIRAD -- Whole plant physiology modelling
Fred van Eeuwijk, WUR -- New approaches to GxE and QTxE
Subhash Chandra, ICRISAT -- iMAS integrating mapping and molecular breeding software
Jiankang Wang, CSIRO -- Future plans for molecular breeding simulation tools
Hans Braun, CIMMYT -- A practical perspective on the application of molecular breeding simulation tools
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Subprogramme 4:
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Theo van Hintum, SP4 Leader -- Opening comments
Graham McLaren, IRRI -- Development of an Integrated Information Platform
Richard Bruskiewich, IRRI -- Development of GenerationCP Domain models
Guy Davenport, CIMMYT -- Creation and maintenance of templates for GenerationCP data storage in repositories
Tom Hazekamp, IPGRI -- Development of GenerationCP Central Repository
Richard Bruskiewich, IRRI -- Development of GenerationCP Central Repository
Milko Skovic, IPGRI -- Implementation of web services technology in GenerationCP Consortium
Thomas Metz, IRRI -- GCP Software Engineering Collaboration and Management
Xavier Perrier, CIRAD -- Development of decision support systems for sampling germplasm
**Anthony Collins, CIP -- Integration of High Performance Computing (HPC) facilities in the GCP toolbox
Graham McLaren, IRRI -- Improvement of Quality of Existing Databases
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Subprogramme 5:
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Carmen de Vicente, SP5 Leader -- SP5 presentation and update
**Suresh Kumar -- GCP Fellowships + Travel grants
**Daniel Fonceka -- GCP Fellowships + Travel grants
Heru Kuswantoro -- GCP Fellowships + Travel grants
Marja Thijssen -- Development of training materials and Helpdesk
S. Chandra -- GCP Training Program
Karine Malgrand -- Project proposal design and writing training workshops
Theresa Fulton -- Interactive Resource Center
Robin Pistorius -- Regional Courses, Workshop in China Symposium and Distance Policies
Thordis Moeller -- Asset Inventory and IP matters
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PARALLEL SESSION 1:
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Strategies for mining diversity and how to cope with large collections
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PARALLEL SESSION 2:
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Strategies allele discovery and how to cope with complex traits
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PARALLEL SESSION 3:
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Reaching the Breeders
Jonathan Crouch, CIMMYT -- Reducing Global Poverty through Molecular Breeding
Richard Edema, AMBIONET -- The African Molecular Marker The African Molecular Marker Applications Network (AMMAnet): Mission, Objectives and Activities Mission, Objectives and Activities
Luz George, CIMMYT -- Maize-MAS in Asia: The Asian Maize Biotechnology Network
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DAY 3
BRAINSTORMING SESSION REPORTS:
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GROUP A moderated by Jonathan Crouch
Outputs for Discussion Group A
Breakout Group 1 Rapporteur: Claire Billot Feedback report on Genetic and Genomic Resources and Capacity Building
Breakout Group 2 Rapporteur: Peter Balint-Kurti Feedback report on Traits and Software and Data Management
Breakout Group 3 Rapporteur: Sarah Hearne Feedback report on Genetic Basis and Breeding Tools
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GROUP B moderated by Carmen de Vicente
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Outputs for Discussion Group B (not available as of 7 Oct)
Breakout Group 1 Rapporteur: James Gethi Feedback report on Genetic Basis
Breakout Group 2 Feedback report on Breeding Tools
Breakout Group 3 Feedback report on Capacity Building
Breakout Group 4 Rapporteur: Michael Baum Feedback report on Genetic Resources
Breakout Group 5 Rapporteur: Guy Davenport Feedback report on Traits
Breakout Group 6 Rapporteur: Richard Bruskiewich Feedback report on Data Management and Bioinformatics
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GROUP C moderated by Theo van Hintum
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Outputs for Discussion Group C
Breakout Group 1 Rapporteur: Andrew Farmer Feedback report on Software and Training
Breakout Group 2 Rapporteur: Rajeev Varshney Feedback report on Genetic Resources
Breakout Group 3 Rapporteur: Bonnie Furman
Feedback report on Traits and Breeding Tools/Protocols
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GROUP D moderated by Hei Leung
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Outputs for Discussion Group D
Breakout groups summary Rapporteurs: Jan Leach, Elizabeth Arnaud, and Merideth Bonierbal Feedback report on outputs
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GROUP E moderated by Jean Christophe Glaszmann
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Outputs for Discussion Group E (not available as of 7 Oct)
Breakout Group 1 Rapporteur: Vincent Vadez Feedback report on Traits/Breeding
Breakout Group 2 Rapporteur: Bridget Crampton Feedback report on Capacity Building
Breakout Group 3 Rapporteur: David Bertioli Feedback report on Genetic Material/Genomics
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