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DAY 1
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Session I: Exploiting Allelic Diversity
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Hari Upadhyaya, ICRISAT
Completing genotyping (barley, wheat, sorghum, chickpea)
Andy Pereira, WUR
Systematic evaluation of rice mutant collections for conditional phenotypes with emphasis on stress tolerance
**Mark Sawkins, CIMMYT
Development of Informative Markers through Association Mapping in Maize to Improve Drought Tolerance in Cereals
Richard Bruskiewich, IRRI
Development and application of the GenerationCP domain models
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Session II: Gene Discovery and Mining
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Mathias Lorieux, CIAT
Exploring natural genetic variation: developing genomic resources and introgression lines for four AA genome rice relatives
Michael Baum, ICARDA
Allele Mining Based on Non-Coding Regulatory SNPs in barley germplasm
**Abdelbagi M. Ismail, IRRI
Revitalizing marginal lands: discovery of genes for tolerance of saline and phosphorus deficient soils to enhance and sustain productivity
Graham McLaren, IRRI
Improvement of quality of existing databases
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Session III: Marker Development
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Rebecca Nelson, Cornell
Targeted discovery of superior disease QTL, alleles in the maize and rice genomes
**Martin Fregene, CIAT
Development of low-cost technologies for pyramiding useful genes from wild relatives of cassava into elite progenitors
Scott Chapman, UQ/CSIRO
Optimizing marker-assisted breeding systems for assisted breeding systems for drought tolerance in cereals through linkage of drought tolerance in cereals through linkage of physiological and genetic models
**Tom Hazekamp, IPGRI
The Generation Challenge Programme Information Infrastructure
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Session IV: Molecular Breeding and Delivery Plans
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**David Bertioli, UCB
Unlocking the genetic diversity in peanut's wild relatives with genomic and genetic tools
Zhi-Kang LI, CAAS
Drought Tolerant Rice Cultivars for North China and South/Southeast Asia by Highly Efficient Pyramiding of QTL's fro Diverse Origins
Carmen De Vicente, GCP
The GCP Strategy for Enabling The GCP Strategy for Enabling Delivery
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DAY 2
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Subprogramme 1:
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Jean Christophe Glaszmann, SP1 Leader --
Plan for the day and report of the Chennai workshop
Hari Upadhyaya, ICRISAT --
Groundnut core collection/genotyping #03f
Bonnie Furman, ICARDA --
Lentil core collection/genotyping #03e
Hari Upadhyaya, ICRISAT --
Pigeon pea core collection/genotyping #03b
Jean Christophe Glaszmann, Agropolis --
Coconut genotyping: LD assessment #03g
Marc Ghislain, CIP --
Sweet potato core collection/genotyping #03c
**Martin Fregene, CIAT --
Cassava genotyping: traditional and breeding materials #02j and #08
Susanne Dreisigacker, CIMMYT --
Maize genotyping: migrations out of America #02a and comp#14
Andrzej Kilian, DArT PL --
DArT markers #04
Marc Ghislain, CIP --
Potato genotyping: wild/traditional and breeding materials #02j and #08
**Ken McNally, IRRI --
Rice genotyping; #02c, #35 and #05; high throughput SNP development
**Ken McNally, IRRI --
EcoTILLing
**Frederico Duraes, EMBRAPA --
Phenotyping network at Embrapa
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Subprogramme 2:
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Hei Leung, SP2 Leader --
Plan for the day
Hans-Joachim Braun, CIMMYT --
Wheat genetic stock assembly and utilization
Matthew Blair, CIAT --
Legume mutant resource development/drought mapping in bean
Merideth Bonierbale, CIP --
Tuber genetic stocks and gene function validation tools
Sarah Hearne, IITA, and Tom Hash, ICRISAT --
Stress response-enriched EST resources for targeted species (cowpea and pearl millet)
Roland Schefleitner, CIP --
Validation of conserved orthologous markers
Nour Ahmadi, CIRAD --
QTL mapping for drought tolerance
**Takuji Sasaki, NIAS and Nicolas Roux, INIBAP -
Targeted Musa genome sequencing and frame map construction
**Ken McNally, IRRI -
Genome-wide SNP discovery across multiple rice varieties -
Pietro Piffanelli, CIRAD --
Functional genomics of cross-species resistance to fungal diseases in rice and wheat (CEREALIMMUNITY)
**Mark Sawkins, CIMMYT --
Determination of a common genetic basis for tissue growth rate under water-limited conditions across plant organs and genomes
Tiegang Lu, CAAS --
Crop gene expression profiles and stress-gene arrays
John Bennett, IRRI --
Identifying Genes Responsible for Failure of Grain Formation in Rice and Wheat under Drought
Jurandir Magalhaes, Embrapa --
Isolation and Characterization of Aluminum Tolerance Genes in the Cereals: An Integrated Functional Genomic, Molecular Genetic and Physiological Analysis
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Subprogramme 3:
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**Kazuko Yamaguchi-Shinozaki, JIRCAS --
Overview of DREB research at JIRCAS
John Bennett, IRRI --
Progress in evaluation of DREB transgenics
Willy de Greef, IPBO --
Biosafety concerns specific to the deployment of abiotic stress transgenics
Shawn Sullivan, GCP legal counsel --
Liability and redress issues related to GMO products
**Victoria Henson-Apollonio, IPGRI --
IP issues and product development pathways for molecular breeding technologies
Nollie Vera Cruz, IRRI --
Low-cost marker technologies in major cereal crops [rice, maize, and wheat ? barley and sorghum]
Festo Massawe, IITA --
Status of marker-assisted selection technologies in legumes and clonal crops [cowpea and groundnut ?chickpea, pigeonpea, lentil]
Martin Fregene, CIAT –
Status of marker-assisted selection technologies in clonal crops [cassava and banana ? yam and coconut]
Alfredo Alves, EMBRAPA --
Cassava drought physiology
Marcel de Raissac, CIRAD --
Whole plant physiology modelling
Fred van Eeuwijk, WUR --
New approaches to GxE and QTxE
Subhash Chandra, ICRISAT --
iMAS integrating mapping and molecular breeding software
Jiankang Wang, CSIRO --
Future plans for molecular breeding simulation tools
Hans Braun, CIMMYT --
A practical perspective on the application of molecular breeding simulation tools
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Subprogramme 4:
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Theo van Hintum, SP4 Leader --
Opening comments
Graham McLaren, IRRI --
Development of an Integrated Information Platform
Richard Bruskiewich, IRRI --
Development of GenerationCP Domain models
Guy Davenport, CIMMYT --
Creation and maintenance of templates for GenerationCP data storage in repositories
Tom Hazekamp, IPGRI --
Development of GenerationCP Central Repository
Richard Bruskiewich, IRRI --
Development of GenerationCP Central Repository
Milko Skovic, IPGRI --
Implementation of web services technology in GenerationCP Consortium
Thomas Metz, IRRI --
GCP Software Engineering Collaboration and Management
Xavier Perrier, CIRAD --
Development of decision support systems for sampling germplasm
**Anthony Collins, CIP --
Integration of High Performance Computing (HPC) facilities in the GCP toolbox
Graham McLaren, IRRI --
Improvement of Quality of Existing Databases
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Subprogramme 5:
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Carmen de Vicente, SP5 Leader --
SP5 presentation and update
**Suresh Kumar --
GCP Fellowships + Travel grants
**Daniel Fonceka --
GCP Fellowships + Travel grants
Heru Kuswantoro --
GCP Fellowships + Travel grants
Marja Thijssen --
Development of training materials and Helpdesk
S. Chandra --
GCP Training Program
Karine Malgrand --
Project proposal design and writing training workshops
Theresa Fulton --
Interactive Resource Center
Robin Pistorius --
Regional Courses, Workshop in China Symposium and Distance Policies
Thordis Moeller --
Asset Inventory and IP matters
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PARALLEL SESSION 1:
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Strategies for mining diversity and how to cope with large collections
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PARALLEL SESSION 2:
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Strategies allele discovery and how to cope with complex traits
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PARALLEL SESSION 3:
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Reaching the Breeders
Jonathan Crouch, CIMMYT --
Reducing Global Poverty through Molecular Breeding
Richard Edema, AMBIONET --
The African Molecular Marker The African Molecular Marker Applications Network (AMMAnet): Mission, Objectives and Activities Mission, Objectives and Activities
Luz George, CIMMYT --
Maize-MAS in Asia: The Asian Maize Biotechnology Network
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DAY 3
BRAINSTORMING SESSION REPORTS:
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GROUP A moderated by Jonathan Crouch
Outputs for Discussion Group A
Breakout Group 1
Rapporteur: Claire Billot
Feedback report on Genetic and Genomic Resources and Capacity Building
Breakout Group 2
Rapporteur: Peter Balint-Kurti
Feedback report on Traits and Software and Data Management
Breakout Group 3
Rapporteur: Sarah Hearne
Feedback report on Genetic Basis and Breeding Tools
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GROUP B moderated by Carmen de Vicente
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Outputs for Discussion Group B (not available as of 7 Oct)
Breakout Group 1
Rapporteur: James Gethi
Feedback report on Genetic Basis
Breakout Group 2
Feedback report on Breeding Tools
Breakout Group 3
Feedback report on Capacity Building
Breakout Group 4
Rapporteur: Michael Baum
Feedback report on Genetic Resources
Breakout Group 5
Rapporteur: Guy Davenport
Feedback report on Traits
Breakout Group 6
Rapporteur: Richard Bruskiewich
Feedback report on Data Management and Bioinformatics
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GROUP C moderated by Theo van Hintum
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Outputs for Discussion Group C
Breakout Group 1
Rapporteur: Andrew Farmer
Feedback report on Software and Training
Breakout Group 2
Rapporteur: Rajeev Varshney
Feedback report on Genetic Resources
Breakout Group 3
Rapporteur: Bonnie Furman
Feedback report on Traits and Breeding Tools/Protocols
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GROUP D moderated by Hei Leung
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Outputs for Discussion Group D
Breakout groups summary
Rapporteurs: Jan Leach, Elizabeth Arnaud, and Merideth Bonierbal
Feedback report on outputs
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GROUP E moderated by Jean Christophe Glaszmann
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Outputs for Discussion Group E (not available as of 7 Oct)
Breakout Group 1
Rapporteur: Vincent Vadez
Feedback report on Traits/Breeding
Breakout Group 2
Rapporteur: Bridget Crampton
Feedback report on Capacity Building
Breakout Group 3
Rapporteur: David Bertioli
Feedback report on Genetic Material/Genomics
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